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These Coconut Flour Cupcakes are light & fluffy, and my kids have declared them to be one of the best cupcakes I’ve ever made. They are perfect for those who need a gluten-free or Paleo cupcake recipe!

coconut flour cupcake with chocolate piped frosting

My Secret Ingredient

What makes these cupcakes extra special is that they have a sneaky healthy ingredient inside— zucchini! I’ve been adding zucchini to this recipe for years, because it replaces the oil without affecting the sweet vanilla flavor. You truly can’t taste it!

chopped zucchini on cutting board and in measuring cup

I’ve tried making this recipe with applesauce and banana instead of zucchini, and both options work, but they don’t fool my kids. The applesauce flavor is especially noticeable, so if you want a truly vanilla-flavored cupcake, stick with the zucchini.

The Best Way to Sweeten Coconut Flour Baked Goods

I originally posted this recipe in 2013, but recently decided to test it again to see if I could make the cupcakes even more fool-proof. I tested them with coconut oil, instead of using zucchini, and guess what? The zucchini version is WAY better! Coconut oil can make coconut flour baked goods become greasy fast.

I also tested this recipe with both maple syrup and coconut sugar. I’ve noticed that maple syrup tends to sink to the bottom of coconut flour baked goods, and it’s not too noticeable in recipes like my Lemon Poppy Seed Muffins, but I definitely notice it in these subtle vanilla cupcakes.

That’s why I now recommend making these coconut flour cupcakes with coconut sugar, instead. The coconut sugar makes the cupcakes turn out a little more tan in color, but the sweetness is much more evenly distributed. And the cupcakes turn out perfectly fluffy, without being too moist!

showing leveled off coconut flour measurement

How to Work with Coconut Flour

If you’ve never worked with coconut flour before, there’s a couple things you should know before you get started.

  1. Always measure correctly. I like to scoop my measuring cup into the bag of coconut flour, getting a heaping cup, and then I use the back of a knife to level it off into a flat measurement. I’ve also included the weight of the measurements I use, in case you prefer to use a kitchen scale.
  2. Don’t make substitutions. Coconut flour isn’t as forgiving as other flours in baking, so making a small modification could drastically affect the final outcome. Experiment at your own risk. In my experience, egg substitutes don’t work very well with coconut flour baked goods, so if you need to be egg-free, try one of my vegan muffin recipes instead.

What I love about working with coconut flour is that it’s naturally gluten-free, and it requires quite a few eggs, so the resulting baked goods are higher in protein. There is definitely a hint of coconut flavor, too, but it’s not overwhelming in this recipe since it doesn’t call for coconut oil, too.

How to Make Them

For best results, I recommend making these cupcakes in a blender. That way you can pulverize the zucchini, and get a super-smooth batter.

coconut flour cupcake ingredients in blender and blended

If your blender isn’t high-powered, blend together the zucchini and eggs first, until the zucchini is totally pureed, then add in the rest of the ingredients and blend again.

Pour the batter into 10 cupcake liners, then bake! Coconut flour tends to stick to pans quite a bit, so I definitely recommend using a liner, so you can guarantee that they will release from the pan later.

before and after of the cupcake batter in the muffin pan

Cool completely, then top them with your favorite frosting.

I have several healthy frosting recipes available, but my favorites are my Vegan Ganache (pictured here) and my Chocolate Vegan Frosting, which is fruit-sweetened.

For a non-chocolate frosting, try my Vegan Cream Cheese Frosting or my Purple Sweet Potato Frosting.

finished cupcakes and one with a bite taken out of it

coconut flour cupcakes on white plate with chocolate frosting

Coconut Flour Cupcakes (only 7 ingredients!)

4.85 from 20 votes
These Coconut Flour Cupcakes are light & fluffy, while being naturally gluten-free! They are also oil-free, with a sneaky serving of zucchini in each bite.
prep10 mins cook25 mins total35 mins
Servings:10

Ingredients
 
 

  • 1/2 cup coconut flour (58 grams)
  • 1 cup zucchini , peeled and finely chopped (134 grams)
  • 4 large eggs (206 grams)
  • 2/3 cup coconut sugar (100 grams)
  • 2 teaspoons baking powder (9 grams)
  • 1/4 teaspoon sea salt (2 grams)
  • 1 tablespoon vanilla extract (12 grams)

Instructions

  • Preheat your oven to 350ºF and line a standard muffin tin with 10 cupcake liners.
  • In a blender, combine the coconut flour, zucchini, eggs, coconut sugar, baking powder, salt, and vanilla. Blend until very smooth. (If you don't have a powerful blender, blend together the zucchini and eggs first, until smooth. Then add in the rest of the ingredients and blend again.)
  • Pour the batter into the 10 cupcake liners. Bake at 350ºF for 25 minutes, or until the center of the cupcakes feels firm to a light touch.
  • Let the cupcakes cool completely before frosting and serving. If making them in advance, store these cupcakes in an airtight container in the fridge for up to 5 days.

Video

Notes

After testing this recipe 10 times, I'm of the opinion that zucchini produces the best cupcake texture, without being oily or with a hint of "healthy" fruit or veggie flavor. If you want to try using applesauce, pumpkin, or mashed banana instead, you are welcome to try that, but keep in mind that the flavor will change with modifications.

Nutrition

Calories: 92kcal | Carbohydrates: 14g | Protein: 3g | Fat: 3g | Saturated Fat: 1g | Cholesterol: 65mg | Sodium: 119mg | Potassium: 137mg | Fiber: 2g | Sugar: 8g | Vitamin A: 120IU | Vitamin C: 2mg | Calcium: 46mg | Iron: 1mg
Course: Dessert
Cuisine: gluten-free
Keyword: coconut flour cupcakes
Nutrition information is for 1 of 10 cupcakes. This is automatically calculated, so it’s just an estimate and not a guarantee.

Original Recipe (posted June 2013)

If you are in love with my original recipe, you can find the measurements for that below.

  • 1/2 cup coconut flour
  • 1/2 cup zucchini
  • 1/2 teaspoon baking soda
  • 1/4 teaspoon salt
  • 1/2 cup maple syrup
  • 4 eggs

Just like the directions above, you’ll blend this together and bake at 350ºF for 25 minutes. If you’ve tried both versions, let me know which one you prefer!

Please leave a comment below if you try the recipe. I’d love to hear what you think! And if you make any modifications, I’d love to hear how that goes, too. We can all benefit from your experience.

Reader Feedback: What’s your favorite flavor of cake or cupcake? Mine is carrot cake, so that’s next on my list!

Megan Gilmore leaning on her white countertop.

Megan Gilmore

Hi, I’m Megan. A former fast food junkie turned best-selling cookbook author. I create healthy recipes made with simple ingredients to make your life easier.

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Comments

  1. These were a big hit at my sons bday party! The cupcake is very moist and has the subtle flavor of coconut. Mine ended up looking a bit lumpy but nothing a big scoop of frosting couldn’t fix up!

  2. Well this recipe looks interesting. I went and bought my zucchini today. I’m using dessicated coconut…had no flour using what I have. It’s in the oven now…we bout to see the proof in the pudding:-) in another 10 or so minutes. I’ll send an update.

  3. I’ve made these twice now. Both times the consistency came out more like a muffin than a cupcake, which I was a little disappointed about, because I was really jonesing for a cupcake texture and flavor, but…. They were still delicious and my toddler ate them like there was no tomorrow, so that’s a huge mom win! Lol also, don’t use cheap cupcake liners; the batter sticks to them so bad that half the cupcake is left on the paper instead of your belly – and THAT is a tragedy!!

  4. I made these tonight for my family, and they were a huge hit! Everyone loved them. The only change I made was I substituted monkfruit sweetener for the coconut sugar. Thank you for an awesome recipe! Do you have any plans for a chocolate version?