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If you’re hoping to serve delicious gluten-free chocolate cupcakes for a birthday party or special event, this almond flour cupcake recipe is for you. These cupcakes have a tender crumb and a flavor that rivals your favorite cupcake recipe!

These Paleo chocolate cupcakes are made with blanched almond flour, so they don’t bake up quite as tall as a bakery cupcake, but they have an amazing taste and texture without using any white flour or sugar. Instead, they are naturally sweetened with maple syrup and require minimal oil, since almonds already contain healthy fats.

Top them with your favorite chocolate frosting, and you’ll have a seriously impressive homemade dessert.

⭐⭐⭐⭐⭐ Featured Review

“I loooove these chocolate cupcakes and love how decadent they taste with such clean ingredients! A party of 10 year olds also loved them so they are perfect in my book, definitely serving these up at every party!” – Katie

Chocolate almond flour cupcake topped with frosting and heart sprinkles.

Almond Flour Cupcake Ingredients

  • Blanched Almond Flour. This recipe calls for blanched almond flour, which means the almonds’ skins are removed before they are finely ground. This creates fluffier baked goods than almond meal, which includes almond skins. (You’ll see brown specks in almond meal, so it’s easy to see the difference.)
  • Cacao Powder. I always keep raw cacao powder in my pantry, because it’s less processed. However, regular cocoa powder should work in this recipe, too!
  • Eggs. These add protein and structure to the cupcakes. Don’t use an egg substitute here! A flax egg or another egg substitute will make sunken, gooey cupcakes.
  • Coconut Oil. Only 2 tablespoons of oil are required for this recipe, and you can use any other oil you prefer, such as olive or avocado oil.
  • Maple Syrup. Not to be confused with processed pancake syrup, your package should list only one ingredient: pure maple syrup. This natural sweetener pairs perfectly with chocolate-flavored recipes!
  • Pantry Staples. Baking powder provides lift (don’t confuse this with baking soda!), and vanilla and salt complete the flavor.

Note: Some comments have recommended adding 1 teaspoon of cornstarch to help the cupcakes rise even more. If you keep that on hand, try it!

ingredients for chocolate almond flour cupcakes labeled on a white surface.

How to Make cupcakes with Almond Flour

Step 1:

Preheat the oven to 350ºF and line a standard muffin tin with 12 paper cupcake liners.

In a large mixing bowl, combine the almond flour, cocoa powder, baking powder, and salt. You can whisk these dry ingredients together first, if you’d like to break up any clumps in the flour, but it’s not necessary since there’s no risk of over-mixing gluten-free cupcake batter. 

Next, add in the maple syrup, eggs, and vanilla extract. It’s best if you can let the eggs and maple syrup come to room temperature before mixing the batter, but this will still work even if they are cold from the fridge. If you’re using cold ingredients, stir in the coconut oil last, so the eggs and maple syrup can lose some of their chill as you stir.

almond flour cupcake batter mixed in a glass bowl with whisk.

Step 2:

Stir the wet ingredients into the batter until it looks smooth, then add the coconut oil and mix again. Use a 1/4 cup to scoop the batter and pour it into the prepared muffin pan. 

Once the batter has been divided evenly among the muffin cups, bake the cupcakes at 350ºF for 25 minutes. You’ll know the cupcakes are done when the centers feel firm to a light touch, or when a toothpick inserted into the center comes out clean with minimal crumbs. 

cupcakes before and after baking in a pan.

Step 3:

Let the cupcakes cool completely in the pan, at least 30 minutes.

Once they are cool, you can top them with your favorite frosting and sprinkles. (Buttercream frosting will melt if you add it to cupcakes that are still warm, so be patient!)

almond flour cupcake with wrapper peeled off and topped with frosting.

Storage Tips

Leftover cupcakes can be stored in an airtight container in the fridge for up to 5 days. If you want to make these ahead of time, you can store them in the fridge before frosting them, too! This chocolate cupcake recipe can also be frozen for up to 3 months if stored in a tightly sealed container. 

Note: If you store these cupcakes at room temperature without covering them, they may dry out overnight. When stored in an airtight container at room temperature (or tightly covered with plastic wrap if you leave them in the pan), almond flour cupcakes can develop a sticky top. They still taste good, but it’s something to keep in mind when storing. The fridge is the best for their texture.

Almond Flour Cupcake Recipe FAQs

Which frosting should I use?

The cupcakes in these photos are topped with Vegan Ganache, which is made with melted chocolate chips and coconut cream. If you prefer a frosting with no refined sugar, try my fruit-sweetened healthy chocolate frosting or vegan cream cheese frosting. Or try Sweet Potato Frosting for beautifully colored options without using food dye.

Are these cupcakes low-carb?

No, my goal in sharing this recipe is to provide a delicious alternative for those who can’t have regular chocolate cupcakes. If you are hoping to make keto chocolate cupcakes, you’ll need to replace the maple syrup with a sugar-free alternative with a similar consistency. (For example, a maple syrup substitute made with erythritol or other zero-calorie sweetener.) I’d love to hear if you’ve had any success making modifications to keto cupcakes!

Can I use a different sweetener?

I don’t recommend using coconut sugar, as it will make this recipe more like brownies. (That’s actually how my almond flour brownies were born!) If you use honey, the honey flavor will be more noticeable, so you might want to use a little less sweetener than this recipe calls for.

Chocolate almond flour cupcake topped with frosting and heart sprinkles.

Chocolate Almond Flour Cupcakes

4.92 from 36 votes
I've spent weeks perfecting these almond flour cupcakes because everyone deserves a delicious, fluffy cupcake, even if you can't eat gluten or grains. The ingredient ratio might surprise you, because almond flour doesn't bake the same way white flour does (it needs more eggs for structure!). So follow the recipe closely, and you'll wind up with delicious chocolate cupcakes that are naturally sweetened and dairy-free.
prep10 mins cook25 mins total35 mins
Servings:12

Ingredients
 
 

Instructions

  • Preheat the oven to 350ºF and line a muffin tin with 12 cupcake liners.
  • In a large bowl, combine the almond flour, cacao powder, baking powder, salt, maple syrup, eggs, and vanilla. Stir well, and be sure to break up any clumps that form until the batter is smooth. Stir in the coconut oil last, so that it will be less likely to clump from touching any cold ingredients.
  • Once the batter is smooth, use a ¼ cup measure to pour the batter into the prepared cupcake liners. They should all be relatively full from this amount of batter. Bake at 350ºF until the center of the cupcakes feel firm to a light touch, about 25 minutes.
  • Let the cupcakes cool completely in the pan; it's okay if they have a slight dip in the center. When they are cool, you can frost them or decorate as you like.
  • These cupcakes should last for up to 5 days when stored in an airtight container in the fridge, or you can freeze them for up to 3 months.

Video

Notes

Nutrition information is for 1 of 12 cupcakes. This information is automatically calculated using generic ingredients and is just an estimate, not a guarantee.
Note: If your eggs and maple syrup are cold from the fridge, they could cause the coconut oil to harden and form clumps in the batter. It’s best if you can bring them to room temperature first, but if you’re in a hurry, this batter will still work as long as you stir in the coconut oil last. (That way it the other ingredients can lose their chill a bit.)

Nutrition

Calories: 151kcal | Carbohydrates: 18g | Protein: 4g | Fat: 8g | Saturated Fat: 3g | Cholesterol: 62mg | Sodium: 121mg | Potassium: 188mg | Fiber: 2g | Sugar: 13g | Vitamin A: 87IU | Calcium: 78mg | Iron: 1mg
Course: Dessert
Cuisine: gluten-free
Keyword: almond flour cupcakes

More Recipes to Try

If you try these Chocolate Almond Flour Cupcakes, please leave a comment and star rating below letting me know how you like them.

Megan Gilmore leaning on her white countertop.

Megan Gilmore

Hi, I’m Megan. A former fast food junkie turned best-selling cookbook author. As a Certified Nutritionist Consultant (CNC), I love to make healthier food using simple ingredients. I test these recipes multiple times in my kitchen to make sure they will turn out perfectly for you.

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Comments

  1. These are fantastic. So light and don’t feel heavy on my stomach! We made a vanilla Swiss buttercream to go on top, which was a better balance for us than a chocolate icing since the cupcakes are a rich dark chocolate. Following another reviewer’s suggestion, we used 1 tsp of arrowroot (she suggested cornstarch) and the cupcakes rose nicely throughout the top, no dips! There was a dip underneath the cupcake but that was no matter. Gave a nice place to put the thumb when eating it!
    I love these because they do not inflame my sensitive stomach and they are not super sweet. I used a sweet homemade icing which was a great way to add on a little sugar sweetness for our Valentine’s Day baking together. We will definitely make these again!

  2. Thank you for this recipe, I was looking for a gluten free sugar free option for a 1 year olds birthday and it was a hit! I did however add a tspn of corn starch ( as suggested by a reviewer) and it turned out delightful. Thanks again

  3. Absolutely delicious. Halved the amount of maple syrup and still perfect. Didn’t have ingredients for a frosting so just put some decorations on top before baking and children were happy with that.

  4. Hi Megan,
    I’m confused with the ingredients. Only 3/4 c of flour? to 3/4 c of syrup? 1/2 c cacao?
    Something seems off here.
    your comments?

    thanks,
    Bob

    1. Those are the measurements I used in the photos! As you can see, the cupcakes aren’t super tall like a bakery cupcake, but they taste delicious.

  5. Made this for my toddler and she loved it! I will try your frosting soon, but alone this was so light and moist. Winning!

  6. These were amazing. My daughter and mom and dad😁 loved them! Mine ended up with little holes in top and seemed runny, but we loved the flavor and will be a favorite here! Thanks

  7. They were moist but kind of bitter. Maybe it was the cocoa powder I used. Which was Ghirardelli 100% cocoa unsweetened powder.

  8. I do like this recipe it’s perfect for my gluten intolerant friend, also I substituted the maple syrup for honey and added coconut and almond extrat to make an almond joy cupcake and it tasted great, the batter was a little water and the cupcakes didn’t rise how I expected but it still tasted great, I will definitely be using this recipe again