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This Spaghetti Squash Casserole tastes remarkably similar to the “Cheesy Hash Brown Casserole” that my mom used to make. Instead of using frozen hash browns, this healthy casserole features nutrient-rich spaghetti squash!

spaghetti squash casserole

Cooked spaghetti squash has a surprisingly similar texture to hash browns, and blends seamlessly into this simple casserole, while being low in calories in carbohydrates. Spaghetti squash also contains vitamins A and C, along with B vitamins, like niacin and thiamin, which are thought to help promote healthy cellular function.

My mom’s hash brown casserole called for sour cream and tons of cheese, so I’ve lightened up this version by using plain goat’s milk yogurt, which has a similar tangy flavor and creaminess.

spaghetti squash casserole recipe

Research has shown that goat’s milk is easier to digest than cow’s milk, which is why I choose to use it in any recipe that calls for dairy, but you’re welcome to use traditional dairy products if they are easier for you.

The most time-consuming part of this recipe is baking the spaghetti squash. You can speed the process by cooking your spaghetti squash in the Instant Pot, either by cutting it in half and scooping out the seeds before cooking it OR you can simply cook it whole. There are pros and cons to both methods. (Here’s how to cook spaghetti squash in the oven.)

spaghetti squash in the instant pot

I think it’s easier to scoop out the seeds from the raw squash without loosing any of the good spaghetti-strands, but the raw squash is challenging to cut.

If you cook it whole, it’s very easy to cut in half later, but then the seeds are a little more tricky to scoop out without losing the nicely cooked spaghetti squash, too.

spaghetti squash recipe

spaghetti squash casserole

Cheesy Spaghetti Squash Casserole

4.85 from 32 votes
ANIMAL PROTEIN  |  Gluten-free, Egg-free, Nut-free, Soy-free
Cooked spaghetti squash has a surprisingly similar texture to hash browns, and blends seamlessly into this simple hash-brown-like casserole. Combined with sauteed onions, creamy yogurt, and a bit of raw goat cheddar, this creamy dish is classic comfort food, without leaving you uncomfortable later.
prep10 mins cook1 hr 5 mins total1 hr 15 mins
Servings:8

Ingredients
 
 

  • 1 medium spaghetti squash
  • 1 tablespoon butter
  • 1/2 yellow onion , chopped
  • 1 garlic clove , minced
  • 1 cup plain goat's milk yogurt , or greek yogurt
  • 3 oz . raw goat cheddar , shredded and divided
  • 1 teaspoon sea salt , or to taste
  • black pepper , to taste

Instructions

  • Preheat the oven to 400F and line a baking sheet with a Silpat or parchment paper. Cut the spaghetti squash in half, and remove the seeds. Place the squash halves cut-side-down on the baking sheet, and cook for 35-45 minutes, or until a fork can easily pierce the outer shell.
  • Once you have removed the cooked squash from the oven, melt the butter in a skillet over medium-high heat and saute the chopped onion and garlic until tender and slightly golden, about 5 minutes.
  • Transfer the cooked onion and garlic to a large mixing bowl, and combine with the yogurt and 2 oz. of shredded goat cheddar, and season with salt and pepper. When the spaghetti squash is cool enough to handle, use a fork to scrape the noodle-like strands into the bowl, and mix well.
  • Transfer the mixture to a 2.5-quart casserole dish, and smooth the top with a spatula. Sprinkle the remaining ounce of goat cheddar over the top, and return to the oven to bake for 30 minutes at 400F.
  • The casserole is ready when the top is a light golden brown, which makes for a crunchy crust! Serve immediately.

Video

Nutrition

Calories: 114kcal | Carbohydrates: 10g | Protein: 4g | Fat: 6g | Saturated Fat: 3g | Cholesterol: 18mg | Sodium: 404mg | Potassium: 198mg | Fiber: 1g | Sugar: 5g | Vitamin A: 325IU | Vitamin C: 3.3mg | Calcium: 143mg | Iron: 0.5mg
Course: Main Course, Side Dish
Cuisine: American
Keyword: casserole, healthy, spaghetti squash
Per serving: Calories: 114, Carbohydrates: 10, Protein: 4, Fat: 6

healthy spaghetti squash casserole with yogurt

Recipe Notes:

  • If you’d prefer not to use goat dairy products, I think Greek yogurt and sharp cheddar cheese would be the closest substitute.
  • Vegans can feel free to try vegan cheese and yogurt as a substitute, too– just make sure the yogurt has no added sugar, or the taste will be off.
  • For those following food combining, spaghetti squash is unique in the sense that it is very hydrating and not starchy, so it can be considered “neutral” for food combining, like a vegetable. That means you can enjoy it with a high-quality meat added in to make it more of a meal-like casserole if you’d like to.

As always, if you make a modification to this recipe please leave a comment below letting us know what worked for you, so we can all benefit from your experience.

Reader Feedback: Are you a fan of hash brown casseroles? It was one of my favorite dishes growing up, so I’m happily enjoying this properly combined version now!

Megan Gilmore leaning on her white countertop.

Megan Gilmore

Hi, I’m Megan. A former fast food junkie turned best-selling cookbook author. As a Certified Nutritionist Consultant (CNC), I love to make healthier food using simple ingredients. I test these recipes multiple times in my kitchen to make sure they will turn out perfectly for you.

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Comments

  1. Thank you so much for you yummy experiments. This is very good. I would have to agree that cheese makes lots of things taste better.

  2. Megan! I made this last Night for dinner and ohh my was it ever good! Im have the leftover for lunch today! This dish is perfect for the stormy weather we have in canada

  3. I made this last night for a girls night dinner/bachelor marathon and it was SO GOOD. I seriously cannot wait to eat the leftovers tonight!! Thanks for the recipe, it will be a new staple!

  4. I just assembled this now for dinner in a few hours! It look amazing! So far all of your recipes have been delicious! I love these kinds of “clean” recipes. I used regular goat cheese like a Chèvre since I didn’t have any goat cheddar, so hopefully it will be just as good. I love the creaminess of it! Enjoy your site blog and my weekly emails for you Megan!

  5. I just made something similar using shredded cabbage that had been blanched instead of squash. It was great and a great way to eat cabbage if you are not a huge fan. Cheese makes everything wonderful!

  6. Hi Megan. I made this tonite and loved it. I am wondering if you have any ideas to add a little crunch to (the top) of it? So nice to have some tasty healthy food during these cold winter months!

  7. O.M.G. I literally ran to the store to get the greek yogurt so I could make this. Spaghetti squash is in the oven!!! I’ve said it before and I’ll say it again, you are a genius!! xo

  8. I would love to try this but my family is vegetarian and some vegan. What can I use instead of goat cheeze and greek yogurt?

    1. Perhaps there are vegan versions of plain yogurt or cheese you could try. Since I haven’t made it myself, I couldn’t tell you exactly!